PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000195376
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 274aa    MW: 29977.7 Da    PI: 6.2238
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000195376genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.1e-1799148255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+ +l+g
  MDP0000195376  99 TYRGVRRRS-SGKWVSEIREPK----KpNRIWLGTFPTPEMAAVAYDVAAIALKG 148
                    69****888.8*********94....468**********************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.6E-3599162IPR001471AP2/ERF domain
PROSITE profilePS5103222.66999156IPR001471AP2/ERF domain
PfamPF008474.3E-1099148IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2099158IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.2E-3099158IPR001471AP2/ERF domain
PRINTSPR003671.0E-10100111IPR001471AP2/ERF domain
CDDcd000183.22E-31100158No hitNo description
PRINTSPR003671.0E-10138158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MESLNPETMH FLILEHKPTX TATXAVQQHL VCTLSLSNSS PSSQFRFISQ IPSLHKWLPP  60
STSNCQSTSN GHISTMHATN TTTTSSSSTT SIVPGRHPTY RGVRRRSSGK WVSEIREPKK  120
PNRIWLGTFP TPEMAAVAYD VAAIALKGQD AELNFPNSAS SLPVPASTSS RDIQAAASSA  180
AAAMGVAIDR CSYSRDEVQG GHHNVHQAHK TVDEDDRFVL NHEFVDEDLI FNMPNVLVNM  240
AEGMLLSPPR LDIAGDDAID ADQEQGDQNL WKXY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1595161368ATERF1
3gcc_A2e-1595161368ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008391810.11e-146PREDICTED: ethylene-responsive transcription factor ERF024
SwissprotQ9SJR01e-53ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLM5VT948e-88M5VT94_PRUPE; Uncharacterized protein
STRINGPOPTR_0006s02180.14e-71(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.13e-42ERF family protein